Centre d'Ecologie Fonctionnelle et Evolutive

Logiciels en dynamique des populations
(Estimation de paramètres démographiques à partir d'individus marqués)

Mots-clés : logiciel, capture-recapture, statistique, modèle, tests d'adéquation, estimation de paramètres démographiques, multi-états, multi-évènements, chaine de Markov cachée.

TWO STEPS TO DOWNLOAD E-SURGE, M-SURGE, U-CARE
with MATLAB LIBRARIES

----------------------------------------- STEP 1 ------------------------------------------

Download the libraries V 9 needed by E-SURGE V2.2.3 and U-CARE V 3.3.0

Matlab LIBRAIRIES Version 9-6 (Windows 64)

available also from the MATLAB libraries site

------------------------------------------ STEP 2 ------------------------------------------

Download versions E-SURGE V 2.2.3 and U-CARE V 3.3.0

VERSION E-SURGE 2-2-3/ U-CARE 3-3-0 (Windows 64)

(incorporating R to E-SURGE, R2ESURGE.pdf, ANSWERS2019.docx)

VERSION E-SURGE 2-2-3/ U-CARE 3-3-0 (LINUX 64, readme)

E S U R G E	E-SURGE for multiEvent SURvival Generalized Estimation A general software for multievent capture-recapture models. CHOQUET, R., ROUAN, L., PRADEL, R. (2009). Program E-SURGE: a software application for fitting Multievent models Series: Environmental and Ecological Statistics , Vol. 3 Thomson, David L.; Cooch, Evan G.; Conroy, Michael J. (Eds.) p 845-865 CHOQUET, R., NOGUE, E. (2011). E-SURGE 1.8 User’s Manual. CEFE, Montpellier, France. Read me, News et FAQ
M S U R G E	M-SURGE for Multistate SURvival Generalized Estimation A general software for multistate capture-recapture models. CHOQUET, R., A.-M. REBOULET, R. PRADEL, O. GIMENEZ and J.-D. LEBRETON (2004). M-SURGE: new software specifically designed for multistate capture-recapture models. Animal Biodiversity and Conservation 27(1): 207-215. CHOQUET, R., REBOULET, A.M., PRADEL, R., GIMENEZ, O., LEBRETON, J.D.(2005). M-SURGE 1.8 User’s Manual CEFE, UMR 5175, CNRS, Montpellier, France. (made with Word) (improved version with hyperlink made with Latex )
U C A R E	U-CARE for Utilities for CApture-REcapture A software for goodness-of-fit test of a general model (including :multistate JollyMoVe and Arnason-Schwarz models) CHOQUET, R., LEBRETON, J.D., GIMENEZ, O., REBOULET, A.M. and PRADEL R. (2009). U-CARE: Utilities for performing goodness of fit tests and manipulating CApture-REcapture data. Ecography. 32:1071-1074. CHOQUET, R., REBOULET, A.M., LEBRETON, J.D., GIMENEZ, O., PRADEL, R.(2020) U-CARE 3.3 User's Manual. CEFE, UMR 5175, CNRS, Montpellier, France