Biostatistiques et Biologie des Populations

Publications de l'équipe

Nos publications au 8 juin 2013 sur les 5 dernières années

 

1.   Abadi F., Gimenez O., Arlettaz R., Schaub M.(2010). An assessment of integrated population models: bias, accuracy, and violation of the assumption of independence. Ecology 91: 7-14.

 

2.   Abadi F., Gimenez O., Ullrich B., Arlettaz R., Schaub M.(2010). Estimation of immigration rate using integrated population models. Journal of Applied Ecology 47: 393-400.

 

3.   Abadi F., Gimenez O., Jakober H., Stauber W., Arlettaz R., Schaub M.(2012). Estimating the strength of density dependence in the presence of observation errors using integrated population models. Ecological Modelling 242: 1-9.

 

4.   Alderman R., Gales R., Tuck G.N., Lebreton J.-D.(2011). Global population status of shy albatross and an assessment of colony-specific trends and drivers. Wildlife Research 38: 672-686.

 

5.   Archaux F., Henry P.-Y., Gimenez O.(2012). When can we ignore the problem of imperfect detection in comparative studies? Methods in Ecology and Evolution 3: 188-194.

 

6.   Avril A., Letty J., Pradel R., Léonard Y., Santin-Janin H., Pontier D.(2012). A multi-event model to study stage-dependence dispersal in radio-collared hares: when hunting promotes costly transience. Ecology 93: 1305-1316.

 

7.   Balkiz Ö., Béchet A., Rouan L., Choquet R., Germain C., Amat J.A., Rendón-Martos M., Baccetti N., Özesmi U., Pradel R.(2009). Metapopulation dynamics of the greater flamingo Phoenicopterus roseus in the Mediterranean: implications for conservation. Proceedings of the IVth International Workshop on the Greater Flamingo in the Mediterranean region and northwest Africa, Wildfowl & Wetlands Trust, Slimbridge, UK. Flamingo Special publication 1: 12-16.

 

8.   Balkiz Ö., Özesmi U., Pradel R., Germain C., Siki M., Amat J.A., Rendón-Martos M., Baccetti N., Béchet A.(2009). An update of the greater flamingo Phoenicopterus roseus status in Turkey. Proceedings of the IVth International Workshop on the Greater Flamingo in the Mediterranean region and northwest Africa, Wildfowl & Wetlands Trust, Slimbridge, UK. Flamingo Special publication 1: 30-33.

 

9.   Balkiz Ö., Béchet A., Rouan L., Choquet R., Germain C., Amat J.A., Rendón-Martos M., Baccetti N., Nissardi S., Özesmi U., Pradel R.(2010). Experience-dependent natal philopatry of breeding greater flamingos. Journal of Animal Ecology 79: 1045-1056.

 

10.          Barnagaud J.-Y., Crochet P.-A., Magnani Y., Bernard Laurent A., Menoni E., Novoa C., Gimenez O.(2011). Short-term response to the North Atlantic Oscillation but no long-term effects of climate change on the reproductive success of an alpine bird. Journal of Ornithology 152: 631-641.

 

11.          Bauduin S., Martin J., Edwards H.H., Gimenez O., Koslovsky S., Fagan D.(2012). An index of risk of co-occurrence between marine mammals and watercrafts: example of the Florida manatee. Biological Conservation 159: 127-136.

 

12.          Bellan S., Gimenez O., Choquet R., Getz W.(2013). A hierarchical distance sampling approach to estimating mortality rates from opportunistic carcass surveillance data. Methods in Ecology and Evolution: sous presse.

 

13.          Bergeron P., Montiglio P.-O., Reale D., Humphries M., Gimenez O., Garant D.(2013). Disruptive viability selection on adult exploratory behavior in eastern chipmunks. Journal of Evolutionary Biology 26: 766-774.

 

14.          Besnard A., Novoa C., Gimenez O.(2010). Hunting impact on the population dynamics of Pyrenean grey partridge Perdix perdix hispaniensis. Wildlife Biology 16: 135-143.

 

15.          Bischof R., Swenson J.E., Yoccoz N.G., Mysterud A., Gimenez O.(2009). The magnitude and selectivity of natural and multiple anthropogenic mortality causes in hunted brown bears. Journal of Animal Ecology 78: 656-665.

 

16.          Blanc L., Marboutin E., Gatti S., Gimenez O.(2013). Abundance of rare and elusive species: empirical investigation of closed versus spatially explicit capture-recapture models with lynx as a case study. Journal of Wildlife Management 77: 372-378.

 

17.          Bolker B., Gardner B., Maunder M., Berg C., Brooks M., Comita L., Crone E., Cubaynes S., Davies T., de Valpine P., Ford J., Gimenez O., Kéry M., Kim E., Lennert-Cody C., Magnusson A., Martell S., Nash J., Nielsen A., Regetz J., Skaug H., Zipkin E.(2013). Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS. Methods in Ecology and Evolution: sous presse.

 

18.          Bonadonna F., Sanz-Aguilar A.(2012). Kin recognition and inbreeding avoidance in wild birds: the first evidence for individual kin-related odour recognition. Animal Behaviour 84: 509-513.

 

19.          Borysiewicz R.S., Morgan B.J.T., Hénaux V., Bregnballe T., Lebreton J.-D., Gimenez O. (2009). An integrated analysis of multisite recruitment, mark-recapture-recovery and multisite census data. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 579-591.

 

20.          Bouwhuis S., Choquet R., Sheldon B.C., Verhulst S.(2012). The forms and fitness cost of senescence: age-specific recapture, survival, reproduction, and reproductive value in a wild bird population. The American Naturalist 179: E15-E27.

 

21.          Buoro M., Prevost E., Gimenez O.(2010). Investigating evolutionary trade-offs in wild populations of Atlantic salmon (Salmo salar): incorporating detection probabilities and individual heterogeneity. Evolution 64: 2629-2642.

 

22.          Buoro M., Gimenez O., Prévost E.(2012). Assessing adaptive phenotypic plasticity by means of conditional strategies from empirical data: the latent environmental threshold model. Evolution: sous presse, early view.

 

23.          Buoro M., Prévost E., Gimenez O.(2012). Digging through model complexity: using hierarchical models to uncover evolutionary processes in the wild. Journal of Evolutionary Biology 25: 2077-2090.

 

24.          CamE., Aubry L.(2011). Early development, recruitment and life history trajectory in long-lived birds. Journal of Ornithology 152: 187-201.

 

25.          Cam E., Gimenez O., Alpizar-Jara R., Aubry L.M., Authier M., Cooch E.G., Koons D.N., Link W.A., Monnat J.-Y., Nichols J.D., Rotella J.J., Royle J.A., Pradel R.(2013). Looking for a needle in a haystack: inference about individual fitness components in a heterogeneous population. Oikos 122: 739-753.

 

26.          Caniglia R., Fabbri E., Cubaynes S., Gimenez O., Lebreton J.-D., Randi E.(2012). An improved procedure to estimate wolf abundance using non-invasive genetic sampling and capture-recapture mixture models. Conservation Genetics 13: 53-64.

 

27.          Chambert T., Pardo D., Choquet R., Staszewski V., McCoy K.D., Tveraa T., Boulinier T.(2012). Heterogeneity in detection probability along the breeding season in Black-legged Kittiwakes: implications for sampling design. Journal of Ornithology 152 (Suppl. 2): S371-S380.

 

28.          Chambert T., Staszewski V., Lobato E., Choquet R., Carrie C., McCoy K.D., Tveraa T., Boulinier T.(2012). Exposure of black-legged kittiwakes to Lyme disease spirochetes: dynamics of the immune status of adult hosts and effects on their survival. Journal of Animal Ecology 81: 986-995.

 

29.          Champagnon J., Guillemain M., Gauthier-Clerc M., Lebreton J.-D., Elmberg J.(2009). Consequences of massive bird releases for hunting purposes: Mallard Anas platyrhynchos in the Camargue, southern France. Wildfowl Special Issue 2: 184-191.

 

30.          ChampagnonJ., Guillemain M., Elmberg J., Folkesson K., Gauthier-Clerc M.(2010). Changes in Mallard Anas platyrhynchos bill morphology after 30 years of supplemental stocking. Bird Study 57: 344-351.

 

31.          Champagnon J., Elmberg J., Guillemain M., Gauthier-Clerc M., Lebreton J.-D.(2012). Conspecifics can be aliens too: a review of effects of restocking practices in vertebrates. Journal for Nature Conservation 20: 231-241.

 

32.          ChampagnonJ., Guillemain M., Elmberg J., Massez G., Cavallo F., Gauthier-Clerc M.(2012). Low survival after release into the wild: assessing "the burden of captivity" on Mallard physiology and behaviour. European Journal of Wildlife Research 58: 255-267.

 

33.          Champagnon J., Gauthier-Clerc M., Lebreton J.-D., Mouronval J.-B., Guillemain M.(2013). Les canards colverts lâchés pour la chasse interagissent-ils avec les populations sauvages ? Faune Sauvage N° 298: 4-9.

 

34.          Charmantier A., Buoro M., Gimenez O., Weimerskirch H.(2011). Heritability of short-scale natal dispersal in a large-scale foraging bird, the wandering albatross. Journal of Evolutionary Biology 24: 1487-1496.

 

35.          Charpentier M.J.E., Prugnolle F., Gimenez O., Widdig A.(2008). Genetic heterozygosity and sociality in a primate species. Behavior Genetics 38: 151-158.

 

36.          Charpentier M.J.E., Huchard E., Widdig A., Gimenez O., Salle B., Kappeler P., Renoult J.P.(2012). Distribution of affiliative behavior across kin classes and their fitness consequences in mandrills. Ethology 118: 1198-1207.

 

37.          Choquet R.(2008). Automatic generation of multistate capture recapture models. Canadian Journal of Statistics 36: 43-57.

 

38.          Choquet R., Lebreton J.-D., Gimenez O., Reboulet A.-M., Pradel R.(2009). U-CARE: utilities for performing goodness of fit tests and manipulating CApture-REcapture data. Ecography 32: 1071-1074.

 

39.          Choquet R., Rouan L., Pradel R. (2009). Program E-SURGE: a software application for fitting multievent models. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 845-865.

 

40.          Choquet R., Viallefont A., Rouan L., Gaanoun K., Gaillard J.-M.(2011). A semi-Markov model to assess reliably survival patterns from birth to death in free-ranging populations. Methods in Ecology and Evolution 2: 383-389.

 

41.          Choquet R., Cole D.J.(2012). A hybrid symbolic-numerical method for determining model structure. Mathematical Biosciences 236: 117-125.

 

42.          Choquet R., Gimenez O.(2012). Towards built-in capture-recapture mixed models in program E-SURGE. Journal of Ornithology: sous presse, online first.

 

43.          Choquet R., Carrié C., Chambert T., Boulinier T.(2013). Estimating transitions between states using measurements with imperfect detection: application to serological data. Ecology: sous presse.

 

44.          Choquet R., Guédon Y., Besnard A., Guillemain M., Pradel R.(2013). Estimating stop over duration in the presence of trap-effects. Ecological Modelling 250: 111-118.

 

45.          Choquet R., Sanz-Aguilar A., Doligez B., Nogué E., Pradel R., Gustafsson L., Gimenez O.(2013). Estimating demographic parameters from capture-recapture data with dependence among individuals within clusters. Methods in Ecology and Evolution: sous presse.

 

46.          Crespin L., Choquet R., Lima M., Merritt J., Pradel R.(2008). Is heterogeneity of catchability in capture-recapture studies a mere sampling artifact or a biologically relevant feature of the population? Population Ecology 50: 247-256.

 

47.          Cubaynes S., Pradel R., Choquet R., Duchamp C., Gaillard J.-M., Lebreton J.-D., Marboutin E., Miquel C., Reboulet A.-M., Poillot C., Taberlet P., Gimenez O.(2010). Importance of accounting for detection heterogeneity when estimating abundance: the case of french wolves. Conservation Biology 24: 621-626.

 

48.          Cubaynes S., Doherty Jr. P.F., Schreiber E.A., Gimenez O.(2011). To breed or not to breed: a seabird's response to extreme climatic events. Biology Letters 7: 303-306.

 

49.          Cubaynes S., Doutrelant C., Grégoire A., Perret P., Faivre B., Gimenez O.(2012). Testing hypotheses in evolutionary ecology with imperfect detection: capture-recapture structural equation modeling. Ecology 93: 248-255.

 

50.          Cubaynes S., Lavergne C., Marboutin E., Gimenez O.(2012). Assessing individual heterogeneity using model selection criteria: How many mixture components in capture-recapture models? Methods in Ecology and Evolution: sous presse.

 

51.          Décamps H., Lebreton J.-D.(2011). [Foreword]. Comptes Rendus, Biologies 334: 343-345.

 

52.          Desprez M., Pradel R., Cam E., Monnat J.Y., Gimenez O.(2011). Now you see him, now you don't: experience, not age, is related to reproduction in kittiwakes. Proceedings of the Royal Society B, Biological Sciences 278: 3060-3066.

 

53.          Desprez M., Crivelli A.J., Lebel I., Massez G., Gimenez O.(2013). Demographic assessment of a stocking experiment in European Eels. Ecology of Freshwater Fish: sous presse.

 

54.          Devineau O., Guillemain M., Johnson A.R., Lebreton J.-D.(2010). A comparison of green-winged teal Anas crecca survival and harvest between Europe and North America. Wildlife Biology 16: 12-24.

 

55.          Duriez O., Sæther S.A., Ens B.J., Choquet R., Pradel R., Lambeck R.H.D., Klaassen M.(2009). Estimating survival and movements using both live and dead recoveries: a case study of oystercatchers confronted with habitat change. Journal of Applied Ecology 46: 144-153.

 

56.          Duriez O., Ens B.J., Choquet R., Pradel R., Klaassen M.(2012). Comparing the seasonal survival of resident and migratory oystercatchers: carry-over effects of habitat quality and weather conditions. Oikos 121: 862-873.

 

57.          Fernandez-Chacon A., Genovart M., Pradel R., Tavecchia G., Bertolero A., Piccardo J., Forero M.G., Afan I., Muntaner J., Oro D.(2013). When to stay, when to disperse and where to go: dispersal patterns in a spatially structured seabird population. Ecography: sous presse.

 

58.          Fletcher D., Lebreton J.-D., Marescot L., Schaub M., Gimenez O., Dawson S., Slooten E.(2012). Bias in estimation of adult survival and asymptotic population growth rate caused by undetected capture heterogeneity. Methods in Ecology and Evolution: sous presse.

 

59.          Fontaine R., Gimenez O., Bried J.(2011). The impact of introduced predators, light-induced mortality of fledglings and poaching on the dynamics of the Cory's shearwater (Calonectris diomedea) population from the Azores, northeastern subtropical Atlantic. Biological Conservation 144: 1998-2011.

 

60.          Frank B.M., Gimenez O., Baret P.V.(2012). Assessing brown trout (Salmo trutta) spawning movements with multistate capture-recapture models: a case study in a fully controlled Belgian brook. Canadian Journal of Fisheries and Aquatic Sciences 69: 1091-1104.

 

61.          Gaillard J.-M., Lebreton J.-D., Garnier E., Poitevin F., Geniez P., Cheylan M., Jay-Robert P. (2011). Les bases de données pour établir des priorités de conservation et analyser les traits qui rendent les espèces sensibles aux activités humaines. In: Activités humaines et dynamique de la biodiversité en région méditerranéenne : problématique scientifique, enjeux de conservation (Thompson J.D. & Gauthier P., Eds.), Centre d'Ecologie Fonctionnelle et Evolutive (CEFE), Montpellier, p. 68.

 

62.          Gamelon M., Besnard A., Gaillard J.-M., Servanty S., Baubet E., Brandt S., Gimenez O.(2011). High hunting pressure selects for earlier birth date: wild boar as a case study. Evolution 65: 3100-3112.

 

63.          Gamelon M., Gaillard J.-M., Servanty S., Gimenez O., Toïgo C., Baubet E., Klein F., Lebreton J.-D.(2012). Making use of harvest information to examine alternative management scenarios: a body weight-structured model for wild boar. Journal of Applied Ecology 49: 833-841.

 

64.          Gamelon M., Gaillard J.-M., Baubet E., Devillard S., Say L., Brandt S., Gimenez O.(2013). Gamelon, M., J.-M. Gaillard, E. Baubet, S. Devillard, L. Say, S. Brandt & O. Gimenez (2013). The relationship between phenotypic variation among offspring and mother body mass in wild boar: Evidence of coin-flipping? Journal of Animal Ecology: sous presse.

 

65.          Gauthier G., Lebreton J.-D.(2008). Analysis of band-recovery data in a multistate capture-recapture framework. Canadian Journal of Statistics 36: 59-73.

 

66.          Gay L., Crochet P.-A., Bell D.A., Lenormand T.(2008). Comparing clines on molecular and phenotypic traits in hybrid zones: a window on tension zone models. Evolution 62: 2789-2806.

 

67.          Gay L., Neubauer G., Zagalska-Neubauer M., Pons J.-M., Bell D.A., Crochet P.-A.(2009). Speciation with gene flow in the large white-headed gulls: does selection counterbalance introgression? Heredity 102: 133-146.

 

68.          Genovart M., Pradel R., Oro D.(2012). Exploiting uncertain ecological fieldwork data with multi-event capture-recapture modelling: an example with bird sex assignment. Journal of Animal Ecology 81: 970-977.

 

69.          Genovart M., Sanz-Aguilar A., Fernández-Chacón A., Igual J.M., Pradel R., Forero M.G., Oro D.(2013). Contrasting effects of climatic variability on the demography of a trans-equatorial migratory seabird. Journal of Animal Ecology 82: 121-130.

 

70.          Ghimire S.K., Gimenez O., Pradel R., McKey D., Aumeeruddy-Thomas Y.(2008). Demographic variation and population viability in a threatened Himalayan medicinal and aromatic herb Nardostachys grandiflora: matrix modelling of harvesting effects in two contrasting habitats. Journal of Applied Ecology 45: 41-51.

 

71.          Gimenez O.(2008). Discussion: towards a Bayesian analysis template? Canadian Journal of Statistics 36: 21-24.

 

72.          Gimenez O., Viallefont A., Charmantier A., Pradel R., Cam E., Brown C.R., Anderson M.D., Brown M.B., Covas R., Gaillard J.-M.(2008). The risk of flawed inference in evolutionary studies when detectability is less than one. The American Naturalist 172: 441-448.

 

73.          Gimenez O., Barbraud C. (2009). The efficient semiparametric regression modeling of capture-recapture data: assessing the impact of climate on survival of two Antarctic seabird species. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 43-58.

 

74.          Gimenez O., Bonner S.J., King R., Parker R.A., Brooks S.P., Jamieson L.E., Grosbois V., Morgan B.J.T., Thomas L. (2009). WinBUGS for population ecologists: bayesian modeling using Markov chain Monte Carlo methods. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 883-915.

 

75.          Gimenez O., Grégoire A., Lenormand T.(2009). Estimating and visualizing fitness surfaces using mark-recapture data. Evolution 63: 3097-3105.

 

76.          Gimenez O., Morgan B.J.T., Brooks S.P. (2009). Weak identifiability in models for mark-recapture-recovery data. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 1055-1067.

 

77.          Gimenez O., Choquet R.(2010). Individual heterogeneity in studies on marked animals using numerical integration: capture-recapture mixed models. Ecology 91: 951-957.

 

78.          Gimenez O., Anker-Nilssen T., Grosbois V.(2012). Exploring causal pathways in demographic parameter variation: Path analysis of mark-recapture data. Methods in Ecology and Evolution: sous presse, early view.

 

79.          Gimenez O., Lebreton J.-D., Gaillard J.-M., Choquet R., Pradel R.(2012). Estimating demographic parameters using hidden process dynamic models. Theoretical Population Biology 82: 307-316.

 

80.          Gimenez O., Abadi F., Barnagaud J.-Y., Blanc L., Buoro M., Cubaynes S., Desprez M., Gamelon M., Guilhaumon F., Lagrange P., Madon B., Marescot L., Papadatou E., Papaïx J., Péron G., Servanty S.(2013). How can quantitative ecology be attractive to young scientists? Balancing computer/desk work with field work. Animal Conservation 16: 134-136.

 

81.          Gosselin F., Lebreton J.-D.(2009). Asymptotic properties of infinite Leslie matrices. Journal of Theoretical Biology 256: 157-163.

 

82.          Gourlay-Larour M.-L., Pradel R., Guillemain M., Santin-Janin H., L'Hostis M., Caizergues A.(2013). Individual turnover in Common Pochards wintering in western France. Journal of Wildlife Management 77: 477-485.

 

83.          Grosbois V., Gimenez O., Gaillard J.-M., Pradel R., Barbraud C., Clobert J., Moller A.P., Weimerskirch H.(2008). Assessing the impact of climate variation on survival in vertebrate populations. Biological Reviews 83: 357-399.

 

84.          Grosbois V., Harris M.P., Anker-Nilssen T., McCleery R.H., Shaw D.N., Morgan B.J.T., Gimenez O.(2009). Modeling survival at multi-population scales using mark-recapture data. Ecology 90: 2922-2932.

 

85.          Grosbois V., Gimenez O. (2010). Capture-mark-recapture models. In: Effects of climate change on birds (Moller A.P., Fiedler W. & Berthold P., Eds.), Oxford University Press, New York, pp. 39-46.

 

86.          Guilhaumon F., Gimenez O., Gaston K.J., Mouillot D.(2008). Taxonomic and regional uncertainty in species-area relationships and the identification of richness hotspots. Proceedings of the National Academy of Sciences USA 105: 15458-15463.

 

87.          Guilhaumon F., Gimenez O., Gaston K.J., Mouillot D.(2009). Reply to Bode and Murdoch: A proper integration of species-area relationship uncertainties into return on investment analyses is needed. Proceedings of the National Academy of Sciences USA 106: E13.

 

88.          Guilhaumon F., Mouillot D., Gimenez O.(2010). mmSAR: an R-package for multimodel species-area relationship inference. Ecography 33: 420-424.

 

89.          Guillemain M., Elmberg J., Gauthier-Clerc M., Massez G., Hearn R., Champagnon J., Simon G.(2010). Wintering French mallard and teal are heavier and in better body condition than 30 years ago: effects of a changing environment? Ambio 39: 170-180.

 

90.          Hardouin L.A., Nevoux M., Robert A., Gimenez O., Lacroix F., Hingrat Y.(2012). Determinants and costs of natal dispersal in a lekking species. Oikos 121: 804-812.

 

91.          Hernandez A., Real J., Pradel R. (2011). Analyse démographique des populations d'Aigle de Bonelli de France, Catalogne et d'autres régions de la péninsule ibérique : recrutement territorial et dispersion des Aigles de Bonelli en France et Catalogne. In: Actes du colloque international "La conservation de l'Aigle de Bonelli", Montpellier, 28 et 29 janvier 2010 (Scher O. & Lecacheur M., Eds.), Conservatoire des Espaces Naturels du Languedoc-Roussillon (CEN LR), Montpellier, pp. 20-22.

 

92.          Hernandez A., Real J., Pradel R. (2011). Analyse démographique des populations d'Aigle de Bonelli de France, Catalogne et d'autres régions de la péninsule ibérique : analyse de la survie et viabilité des populations. In: Actes du colloque international "La conservation de l'Aigle de Bonelli", Montpellier, 28 et 29 janvier 2010 (Scher O. & Lecacheur M., Eds.), Conservatoire des Espaces Naturels du Languedoc-Roussillon (CEN LR), Montpellier, pp. 23-27.

 

93.          Hernández-Matías A., Real J., Pradel R., Ravayrol A., Vincent-Martin N., Bosca F., Cheylan G.(2010). Determinants of territorial recruitment in Bonelli's eagle (Aquila fasciata) populations. The Auk 127: 173-184.

 

94.          Hernández-Matías A., Real J., Pradel R.(2011). Quick methods for evaluating survival of age-characterizable long-lived territorial birds. Journal of Wildlife Management 75: 856-866.

 

95.          Hernández-Matías A., Real J., Pradel R., Ravayrol A., Vincent-Martin N.(2011). Effects of age, territoriality and breeding on survival of Bonelli's eagle Aquila fasciata. Ibis 153: 846-857.

 

96.          Hernández-Matías A., Real J., Moleón M., Palma L., Sánchez-Zapata J.A., Pradel R., Carrete M., Gil-Sánchez J.M., Beja P., Balbontín J., Vincent-Martin N., Ravayrol A., Benítez J.R., Arroyo B., Fernández C., Ferreiro E., García J.(2013). From local monitoring to a broad-scale viability assessment: a case study for the endangered Bonelli's eagle in W Europe. Ecological Monographs: accepté.

 

97.          Jay-Robert P., Lumaret J.-P., Lebreton J.-D.(2008). Spatial and temporal variation of mountain dung beetle assemblages and their relationships with environmental factors (Aphodiinae; Geotrupinae; Scarabaeinae). Annals of the Entomological Society of America 101: 58-69.

 

98.          Jenouvrier S., Tavecchia G., Thibault J.-C., Choquet R., Bretagnolle V.(2008). Recruitment processes in long-lived species with delayed maturity: estimating key demographic parameters. Oikos 117: 620-628.

 

99.          Juillet C., Choquet R., Gauthier G., Pradel R.(2011). A capture-recapture model with double-marking, live and dead encounters, and heterogeneity of reporting due to auxiliary mark loss. Journal of Agricultural, Biological and Environmental Statistics 16: 88-104.

 

100.Juillet C., Choquet R., Gauthier G., Lefebvre J., Pradel R.(2012). Carry-over effects of spring hunt and climate on recruitment to the natal colony in a migratory species. Journal of Applied Ecology 49: 1237-1246.

 

101.Kazakou E., Violle C., Roumet C., Pintor C., Gimenez O., Garnier E.(2009). Litter quality and decomposability of species from a Mediterranean succession depend on leaf traits but not on nitrogen supply. Annals of Botany 104: 1151-1161.

 

102.Khaladi M., Lebreton J.-D., Khermjioui A.(2012). The evolution of dispersal in random environment. Acta Biotheoretica 60: 155-165.

 

103.King R., Morgan B.J.T., Gimenez O., Brooks S.P. (2010). Bayesian analysis for population ecology. Chapman & Hall/CRC, Boca Raton, Florida, 442 p.

 

104.Knudsen E., Linden A., Both C., Jonzen N., Pulido F., Saino N., Sutherland W.J., Bach L.A., Coppack T., Ergon T., Gienapp P., Gill J.A., Gordo O., Hedenstroom A., Lehikoinen E., Marra P.P., Moller A.P., Nilsson A.L.K., Péron G., Ranta E., Rubolini D., Sparks T.H., Spina F., Studds C.E., Saether S.A., Tryjanowski P., Stenseth N.C.(2011). Challenging claims in the study of migratory birds and climate change. Biological Reviews 86: 928-946.

 

105.Lamy T., Gimenez O., Pointier J.-P., Jarne P., David P.(2013). Metapopulation dynamics of species with cryptic life stages. The American Naturalist 181: 479-491.

 

106.Lane J.E., Kruuk L.E.B., Charmantier A., Murie J.O., Coltman D.W., Buoro M., Raveh S., Dobson F.S.(2011). A quantitative genetic analysis of hibernation emergence date in a wild population of Columbian ground squirrels. Journal of Evolutionary Biology 24: 1949-1959.

 

107.Le Bohec C., Durant J.M., Gauthier-Clerc M., Stenseth N.C., Park Y.-H., Pradel R., Grémillet D., Gendner J.-P., Le Maho Y.(2008). King penguin population threatened by Southern Ocean warming. Proceedings of the National Academy of Sciences USA 105: 2493-2497.

 

108.Le Bohec C., Durant J.M., Gauthier-Clerc M., Stenseth N.C., Park Y.-H., Pradel R., Grémillet D., Gendner J.-P., Le Maho Y.(2008). Reply to Barbraud et al.: King penguin population threatened by Southern Ocean warming. Proceedings of the National Academy of Sciences USA 105: E39.

 

109.Lebreton J.-D. (2009). Assessing density-dependence: where are we left? In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 19-42.

 

110.Lebreton J.-D., Nichols J.D., Barker R.J., Pradel R., Spendelow J.A.(2009). Modeling individual animal histories with multistate capture-recapture models. Advances in Ecological Research 41: 87-173.

 

111.Lebreton J.-D., Devillard S., Popy S., Desprez M., Besnard A., Gaillard J.-M.(2010). Towards a vertebrate demographic data bank. Journal of Ornithology: sous presse, online first.

 

112.Lebreton J.-D., Klein E., Gimenez O., Rousset F. (2010). Statistiques pour la biologie évolutive. In: Biologie évolutive (Thomas F., Lefèvre T. & Raymond M., Eds.), De Boeck, Bruxelles, pp. 33-48.

 

113.Lebreton J.-D.(2011). The impact of global change on terrestrial Vertebrates. Comptes Rendus, Biologies 334: 360-369.

 

114.Lebreton J.-D., Choquet R., Gimenez O.(2012). Simple estimation and test procedures in Capture-Mark-Recapture mixed models. Biometrics: sous presse, online first.

 

115.Lebreton J.-D., Décamps H., Douce R. (2013). La biodiversité. Livret de l'Environnement, Académie des Sciences, Paris, 11 p.

 

116.Lebreton J.-D., Gimenez O.(2013). Detecting and estimating density dependence in wildlife populations. The Journal of Wildlife Management 77: 12-23.

 

117.Lebreton J.-D., Véran S.(2013). Direct evidence of the impact of longline fishery on mortality in the Black-footed Albatross Phoebastria nigripes. Bird Conservation International 23: 25-35.

 

118.Libois E., Gimenez O., Oro D., Mínguez E., Pradel R., Sanz-Aguilar A.(2012). Nest boxes: a successful management tool for the conservation of an endangered seabird. Biological Conservation 155: 39-43.

 

119.Lorentzen E., Choquet R., Steen H.(2012). Modelling state uncertainty with photo series data for the estimation of breeding success in a cliff-nesting seabird. Journal of Ornithology: sous presse, online first.

 

120.Madon B., Gimenez O., McArdle B., Baker C., Garrigue C.(2011). A new method for estimating animal abundance with two sources of data in capture-recapture studies. Methods in Ecology and Evolution 2: 390-400.

 

121.Madon B., Garrigue C., Pradel R., Gimenez O.(2013). Transience in the humpback whale population of New Caledonia and implications for abundance estimation. Marine Mammal Science: sous presse.

 

122.Marescot L., Pradel R., Duchamp C., Cubaynes S., Marboutin E., Choquet R., Miquel C., Gimenez O.(2011). Capture-recapture population growth rate as a robust tool against detection heterogeneity for population management. Ecological Applications 21: 2898-2907.

 

123.Marescot L., Gimenez O., Duchamp C., Marboutin E., Chapron G.(2012). Reducing matrix population models with application to social animal species. Ecological Modelling 232: 91-96.

 

124.Marucco F., Pletscher D.H., Boitani L., Schwartz M.K., Pilgrim K.L., Lebreton J.-D.(2009). Wolf survival and population trend using non-invasive capture-recapture techniques in the Western Alps. Journal of Applied Ecology 46: 1003-1010.

 

125.Marzolin G., Charmantier A., Gimenez O.(2011). Frailty in state-space models: application to actuarial senescence in the Dipper. Ecology 92: 562-567.

 

126.McCrea R., Morgan B., Gimenez O., Besbeas P., Lebreton J.-D., Bregnballe T.(2010). Multi-site integrated population modelling. Journal of Agricultural, Biological and Environmental Statistics 15: 539-561.

 

127.Mennerat A., Perret P., Bourgault P., Blondel J., Gimenez O., Thomas D.W., Heeb P., Lambrechts M.M.(2009). Aromatic plants in nests of blue tits: positive effects on nestlings. Animal Behaviour 77: 569-574.

 

128.Mihoub J.-B., Gimenez O., Pilard P., Sarrazin F.(2010). Challenging conservation of migratory species: Sahelian rainfalls drive first-year survival of the vulnerable Lesser Kestrel Falco naumanni. Biological Conservation 143: 839-847.

 

129.Neubauer G., Zagalska-Neubauer M.M., Pons J.-M., Crochet P.-A., Chylarecki P., Przystalski A., Gay L.(2009). Assortative mating without complete reproductive isolation in a zone of recent secondary contact between Herring Gulls (Larus argentatus) and Caspian Gulls (L. cachinnans). The Auk 126: 409-419.

 

130.Nevoux M., Gimenez O., Arlt D., Nicoll M., Jones C., Norris K.(2011). Population regulation of territorial species: both site-dependence and interference mechanisms matter. Proceedings of the Royal Society B, Biological Sciences 278: 2173-2181.

 

131.Papadatou E., Butlin R.K., Pradel R., Altringham J.D.(2009). Sex-specific roost movements and population dynamics of the vulnerable long-fingered bat, Myotis capaccinii. Biological Conservation 142: 280-289.

 

132.Papadatou E., Ibáñez C., Pradel R., Juste J., Gimenez O.(2011). Assessing survival in a multi-population system: a case study on bat populations. Oecologia 165: 925-933.

 

133.Papadatou E., Pradel R., Schaub M., Dolch D., Geiger H., Ibañez C., Kerth G., Popa-Lisseanu A., Schorcht W., Teubner J., Gimenez O.(2012). Comparing survival among species with imperfect detection using multilevel analysis of mark-recapture data: a case study on bats. Ecography 35: 153-161.

 

134.Papaix J., Cubaynes S., Buoro M., Charmantier A., Perret P., Gimenez O.(2010). Combining capture-recapture data and pedigree information to assess heritability of demographic parameters in the wild. Journal of Evolutionary Biology 23: 2176-2184.

 

135.Péron G., Crochet P.-A., Choquet R., Pradel R., Lebreton J.-D., Gimenez O.(2010). Capture-recapture models with heterogeneity to study survival senescence in the wild. Oikos 119: 524-532.

 

136.Péron G., Crochet P.-A., Doherty P.F., Lebreton J.-D.(2010). Studying dispersal at the landscape scale: efficient combination of population surveys and capture-recapture data. Ecology 91: 3365-3375.

 

137.Péron G., Gimenez O., Charmantier A., Gaillard J.-M., Crochet P.-A.(2010). Age at the onset of senescence in birds and mammals is predicted by early-life performance. Proceedings of the Royal Society B, Biological Sciences 277: 2849-2856.

 

138.Péron G., Lebreton J.-D., Crochet P.-A.(2010). Breeding dispersal in Black-headed Gull: the value of familiarity in a contrasted environment. Journal of Animal Ecology 79: 317-326.

 

139.Péron G., Lebreton J.-D., Crochet P.-A.(2010). Costs and benefits of colony size vary during the breeding cycle in Black-headed Gulls Chroicocephalus ridibundus. Journal of Ornithology 151: 881-888.

 

140.Péron G., Ferrand Y., Gossmann F., Bastat C., Guénézan M., Gimenez O.(2011). Nonparametric spatial regression of survival probability: visualization of population sinks in Eurasian Woodcock. Ecology 92: 1672-1679.

 

141.Péron G., Ferrand Y., Gossmann F., Bastat C., Guénézan M., Gimenez O.(2011). Escape migration decisions in Eurasian Woodcocks: insights from survival analyses using large-scale recovery data. Behavioral Ecology and Sociobiology 65: 1949-1955.

 

142.Péron G., Ferrand Y., Choquet R., Pradel R., Gossmann F., Bastat C., Guénézan M., Bauthian I., Julliard R., Gimenez O.(2012). Spatial heterogeneity in mortality and its impact on the population dynamics of Eurasian woodcocks. Population Ecology 54: 305-312.

 

143.Pettex E., Lorentsen S.-H., Grémillet D., Gimenez O., Barrett R.T., Pons J.-B., Le Bohec C., Bonadonna F.(2012). Multi-scale foraging variability in Northern gannet (Morus bassanus) fuels potential foraging plasticity. Marine Biology 159: 2743-2756.

 

144.Pradel R., Maurin-Bernier L., Gimenez O., Genovart M., Choquet R., Oro D.(2008). Estimation of sex-specific survival with uncertainty in sex assessment. Canadian Journal of Statistics 36: 29-42.

 

145.Pradel R. (2009). The stakes of capture-recapture models with state uncertainty. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 781-795.

 

146.Pradel R., Choquet R., Lima M.A., Merritt J.F., Crespin L.(2010). Estimating population growth rate from capture-recapture data in presence of capture heterogeneity. Journal of Agricultural, Biological and Environmental Statistics 15: 248-258.

 

147.Pradel R., Choquet R., Béchet A.(2012). Breeding experience might be a major determinant of breeding probability in long-lived species: the case of the greater flamingo. PLoS One 7: e51016, doi:10.1371/journal.pone.0051016.

 

148.Pradel R., Sanz-Aguilar A.(2012). Modeling trap-awareness and related phenomena in capture-recapture studies. PLoS One 7: e32666, doi:10.1371/journal.pone.0032666.

 

149.Praud A., Gimenez O., Zanella G., Dufour B., Pozzi N., Antras V., Meyer L., Barin-Bastuji B.(2012). Estimation of sensitivity and specificity of five serological tests for the diagnosis of porcine brucellosis. Preventive Veterinary Medicine 104: 94-100.

 

150.Praud A., Gimenez O., Zanella G., Pozzi N., Antras V., Meyer L., Garin-Bastuji B.(2013). Evaluation of five serological tests for the diagnosis of porcine brucellosis in French Polynesia. Tropical Animal Health and Production 45: 931-933.

 

151.Rouan L., Choquet R., Pradel R.(2009). A general framework for modeling memory in capture-recapture data. Journal of Agricultural, Biological and Environmental Statistics 14: 338-355.

 

152.Rouan L., Gaillard J.-M., Guédon Y., Pradel R. (2009). Estimation of lifetime reproductive success when reproductive status cannot always be assessed. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 867-879.

 

153.Rouan L., Cubaynes S., Duchamp C., Miquel C., Reboulet A.-M., Gimenez O., Lebreton J.-D., Choquet R., Pradel R. (2013). Modèles de mélange en capture-recapture. In: Modèles à variables latentes et modèles de mélange (Droesbeke J.-J., Saporta G. & Thomas-Agnan C., Eds.), Technip, Paris, pp. 265-272.

 

154.Sanz-Aguilar A., Tavecchia G., Pradel R., Mínguez E., Oro D.(2008). The cost of reproduction and experience-dependent vital rates in a small petrel. Ecology 89: 3195-3203.

 

155.Sanz-Aguilar A., Anadón J.D., Giménez A., Ballestar R., Graciá E., Oro D.(2011). Coexisting with fire: the case of the terrestrial tortoise Testudo graeca in mediterranean shrublands. Biological Conservation 144: 1040-1049.

 

156.Sanz-Aguilar A., Tavecchia G., Genovart M., Igual J.M., Oro D., Rouan L., Pradel R.(2011). Studying the reproductive skipping behavior in long-lived birds by adding nest inspection to individual-based data. Ecological Applications 21: 555-564.

 

157.Sanz-Aguilar A., Béchet A., Germain C., Johnson A.R., Pradel R.(2012). To leave or not to leave: survival trade-offs between different migratory strategies in the greater flamingo. Journal of Animal Ecology 81: 1171-1182.

 

158.Schaub M., Aebischer A., Gimenez O., Berger S., Arlettaz R.(2010). Massive immigration balances high anthropogenic mortality in a stable eagle owl population: lessons for conservation. Biological Conservation 143: 1911-1918.

 

159.Servanty S., Gaillard J.-M., Toïgo C., Brandt S., Baubet E.(2009). Pulsed resources and climate-induced variation in the reproductive traits of wild boar under high hunting pressure. Journal of Animal Ecology 78: 1278-1290.

 

160.Servanty S., Choquet R., Baubet E., Brandt S., Gaillard J.-M., Schaub M., Toïgo C., Lebreton J.-D., Buoro M., Gimenez O.(2010). Assessing whether mortality is additive using marked animals: a Bayesian state-space modeling approach. Ecology 91: 1916-1923.

 

161.Servanty S., Gaillard J.-M., Ronchi F., Focardi S., Baubet E., Gimenez O.(2011). Influence of harvesting pressure on demographic tactics: implications for wildlife management. Journal of Applied Ecology 48: 835-843.

 

162.Sin-Yeon K., Sanz-Aguilar A., Mínguez E., Oro D.(2012). Close, but not close enough: small-scale spatial variation in local adaptability for life-history traits in a long-lived seabird. Biological Journal of the Linnean Society: accepté.

 

163.Souchay G., Gauthier G., Pradel R.(2013). Temporal variation of juvenile survival in a long-lived species: the role of parasites and body condition. Oecologia: sous presse.

 

164.Tavecchia G., Adrover J., Navarro A.M., Pradel R.(2012). Modelling mortality causes in longitudinal data in the presence of tag loss: application to raptor poisoning and electrocution. Journal of Applied Ecology 49: 297-305.

 

165.Thomson D.L., Conroy M.J., Anderson D.R., Burnham K.P., Cooch E.G., Francis C.M., Lebreton J.-D., Lindberg M.S., Morgan B.J.T., Otis D.L., White G.C. (2009). Standardising terminology and notation for the analysis of demographic processes in marked populations. In: Modeling demographic processes in marked populations (Thomson D.L., Cooch E.G. & Conroy M.J., Eds.), Springer series: Environmental and ecological statistics, Vol. 3, New York, pp. 1099-1106.

 

166.Véran S., Lebreton J.-D.(2008). The potential of integrated modelling in conservation biology: a case study of the black-footed albatross (Phoebastria nigripes). Canadian Journal of Statistics 36: 85-98.

 

167.Véran S., Kleiner K.J., Choquet R., Collazo J.A., Nichols J.D.(2012). Modeling habitat dynamics accounting for possible misclassification. Landscape Ecology 27: 943-956.

 

168.Villemereuil P., Gimenez O., Doligez B.(2013). Comparing parent-offspring regression with frequentist and Bayesian animal models to estimate heritability in wild populations: a simulation study for Gaussian and binary traits. Methods in Ecology and Evolution 4: 260-275.